PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00303g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 90aa    MW: 10443.9 Da    PI: 9.8747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00303g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-11346344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WTt   +++ da +++ ++   +W+ Iar++g g+++++++ ++
  Peaxi162Scf00303g00015.1  3 SWTTKQNKRFEDALALFDKDtpdRWHNIARCVG-GKSAEEVRRHY 46
                              6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.95154IPR017884SANT domain
SMARTSM007175.6E-6152IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-12358IPR009057Homeodomain-like
CDDcd001678.39E-7350No hitNo description
PfamPF002491.2E-7346IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-4451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASWTTKQNK RFEDALALFD KDTPDRWHNI ARCVGGKSAE EVRRHYDLLL KDIMQIENGQ  60
VPLPKYNKAA ESNGRGYANE QRLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-274901193RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771192.13e-54PREDICTED: protein RADIALIS-like 3
RefseqXP_016490582.13e-54PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0ZWJ51e-50M0ZWJ5_SOLTU; Uncharacterized protein
TrEMBLK4BVC91e-50K4BVC9_SOLLC; Uncharacterized protein
STRINGSolyc04g080500.2.14e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-36RAD-like 6